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The human placenta project: Funded studies, imaging technologies, and future directions
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Label-free real-time hyperspectral endoscopy for molecular-guided cancer surgery
L Gao, B Fei US Patent App. 18/045,969
Hemoglobin microbubbles and the prediction of different oxygen levels using RF data and deep learning
T Pathour, S Chaudhary, SR Sirsi, B Fei Medical Imaging 2023: Ultrasonic Imaging and Tomography 12470, 70-76
Deep-learning-based automatic segmentation of the placenta and uterine cavity on prenatal MR images
J Huang, QN Do, M Shahedi, Y Xi, MA Lewis, CL Herrera, D Owen, … Medical Imaging 2023: Computer-Aided Diagnosis 12465, 118-128
A video transformer network for thyroid cancer detection on hyperspectral histologic images
MH Tran, O Gomez, B Fei Medical Imaging 2023: Digital and Computational Pathology 12471, 32-41
Extended depth of field imaging for mosaic hyperspectral images
A Rathgeb, L Ma, M Tran, B Fei Medical Imaging 2023: Digital and Computational Pathology 12471, 53-61
Conditional generative adversarial network (cGAN) for synthesis of digital histologic images from hyperspectral images
L Ma, J Sherey, D Palsgrove, B Fei Medical Imaging 2023: Digital and Computational Pathology 12471, 362-368
Lung nodule false positive reduction using a central attention convolutional neural network on imbalanced data
K Hao, A Cai, XY Feng, L Ma, J Zhu, M Wang, Y Zhang, B Fei Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions, and …
Topography-based feature extraction of the human placenta from prenatal MR images
J Huang, M Shahedi, QN Do, Y Xi, MA Lewis, CL Herrera, D Owen, … Medical Imaging 2023: Image Processing 12464, 460-469
A high-speed hyperspectral laparoscopic imaging system
K Pruitt, B Johnson, J Gahan, L Ma, B Fei Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions, and …
An advanced system with advanced user interfaces for image-guided intervention applications
P Bettati, B Fei Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions, and …
Compact and ultracompact spectral imagers: technology and applications in biomedical imaging
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An automatic whole-slide hyperspectral imaging microscope
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Automated polarized hyperspectral imaging (PHSI) for ex-vivo and in-vivo tissue assessment
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Polarized hyperspectral microscopic imaging for white blood cells on Wright-stained blood smear slides
X Zhou, HK Mubarak, L Ma, D Palsgrove, S Ortega, GM Callicó, … Polarized Light and Optical Angular Momentum for Biomedical Diagnostics 2023 …
Polarized hyperspectral microscopic imaging for collagen visualization on pathologic slides of head and neck squamous cell carcinoma
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Extended reality for biomedicine
J Yuan, SS Hassan, J Wu, CR Koger, RRS Packard, F Shi, B Fei, Y Ding Nature Reviews Methods Primers 3 (1), 14
Corrigendum to: A novel fully automated MRI-based deep-learning method for classification of 1p/19q co-deletion status in brain gliomas
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Longitudinal placental perfusion in normal and hypertensive pregnancies using pseudo-continuous arterial spin labeled MRI
CL Herrera, Y Wang, Y Xi, QN Do, MA Lewis, DM Owen, B Fei, CY Spong, … American Journal of Obstetrics & Gynecology 228 (1), S449-S450
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UDA-CT: A general framework for CT image standardization
M Selim, J Zhang, B Fei, M Lewis, GQ Zhang, J Chen 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
The Contribution of Thoracic Radiation Dose Volumes to Subsequent Development of Cardiovascular Disease in Cancer Survivors
CM Reilly, M Higgins, J Butler, N Esiashvili, B Fei, T Flynn, JD Dormer, … Journal of Cardiovascular Nursing 37 (5), E129-E138
Miniature hyperspectral imaging
B Fei, N Modir US Patent App. 17/670,730
QU-BraTS: MICCAI BraTS 2020 challenge on quantifying uncertainty in brain tumor segmentation-analysis of ranking scores and benchmarking results
R Mehta, A Filos, U Baid, C Sako, R McKinley, M Rebsamen, K Dätwyler, … The journal of machine learning for biomedical imaging 2022
Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging
L Ma, A Rathgeb, H Mubarak, M Tran, B Fei
Journal of Biomedical Optics 27 (5), 056502
Semi-automated three-dimensional segmentation for cardiac CT images using deep learning and randomly distributed points
T Shi, M Shahedi, K Caughlin, JD Dormer, L Ma, B Fei
Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and …
Thyroid carcinoma detection on whole histologic slides using hyperspectral imaging and deep learning
MH Tran, L Ma, JV Litter, AY Chen, B Fei
Medical Imaging 2022: Digital and Computational Pathology 12039, 101-111
Detecting aggressive papillary thyroid carcinoma using hyperspectral imaging and radiomic features
M Halicek, M Shahedi, JV Little, AY Chen, B Fei
Medical Imaging 2022: Computer-Aided Diagnosis 12033, 537-544
Placenta accreta spectrum and hysterectomy prediction using MRI radiomic features
M Shahedi, JD Dormer, QN Do, Y Xi, MA Lewis, CL Herrera, CY Spong, …
Medical Imaging 2022: Computer-Aided Diagnosis 12033, 394-399
A low-cost PVC-based dual-modality kidney phantom
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Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and …
Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and deep learning
X Zhou, L Ma, HK Mubarak, JV Little, AY Chen, LL Myers, BD Sumer, …
Medical Imaging 2022: Digital and Computational Pathology 12039, 91-100
Automatic segmentation of uterine cavity and placenta on MR Images using deep learning
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Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and …
Unsupervised super resolution network for hyperspectral histologic imaging
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Medical Imaging 2022: Digital and Computational Pathology 12039, 149-159
Deep learning-based deformable registration of dynamic contrast enhanced MR images of the kidney
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Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and …
An augmented reality-assisted visualization system for potential applications in prostate biopsy
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Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and …
Identifying unique acoustic signatures from chemically-crosslinked microbubble clusters using deep learning
T Pathour, N Akter, JD Dormer, S Chaudhary, B Fei, S Sirsi
Medical Imaging 2022: Ultrasonic Imaging and Tomography 12038, 128-136
Deep learning-based abdominal muscle segmentation on CT images of surgical patient populations
U Chaudhary, NL Ka’Toria, A Chhabra, A Kohli, B Fei
Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and …
CascadeNet for hysterectomy prediction in pregnant women due to placenta accreta spectrum
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Automatic detection of head and neck squamous cell carcinoma on histologic slides using hyperspectral microscopic imaging
L Ma, JV Little, AY Chen, L Myers, BD Sumer, B Fei
Journal of biomedical optics 27 (4), 046501
The Contribution of Thoracic Radiation Dose Volumes to Subsequent Development of Cardiovascular Disease in Cancer Survivors
CM Reilly, M Higgins, J Butler, N Esiashvili, B Fei, T Flynn, JD Dormer, …
Journal of Cardiovascular Nursing
LED-based hyperspectral endoscopic imaging
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Band selection for oxygenation estimation with multispectral/hyperspectral imaging
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Biomedical Optics Express 13 (3), 1224-1242
The effect of image annotation with minimal manual interaction for semiautomatic prostate segmentation in CT images using fully convolutional neural networks
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Medical physics 49 (2), 1153-1160
Federated Learning for Brain Tumor Segmentation Using MRI and Transformers
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International MICCAI Brainlesion Workshop, 444-454
Disparity Autoencoders for Multi-class Brain Tumor Segmentation
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International MICCAI Brainlesion Workshop, 116-124
Simultaneous brain tumor segmentation and molecular profiling using deep learning and T2w magnetic resonance images
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Brain Tumor MRI Image Segmentation Using Deep Learning Techniques, 57-79
Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction
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Journal of Medical Imaging 9 (1), 016001
The Human Placenta Project: Funded Projects, Imaging Innovation, and Persistent Gaps
CL Herrera, MJ Kim, QN Do, DM Owen, B Fei, AJ Madhuranthakam, Y Xi, …
American Journal of Obstetrics & Gynecology 226 (1), S233-S234
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QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation–Analysis of Ranking Metrics and Benchmarking Results
R Mehta, A Filos, U Baid, C Sako, R McKinley, M Rebsamen, K Dätwyler, …
arXiv preprint arXiv:2112.10074
CT image harmonization for enhancing radiomics studies
M Selim, J Zhang, B Fei, GQ Zhang, J Chen
2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …
Deep learning-based segmentation of the placenta and uterus on MR images
M Shahedi, CY Spong, JD Dormer, QN Do, Y Xi, MA Lewis, C Herrera, …
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Multimedia Information Retrieval
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MRI-based deep-learning method for determining glioma MGMT promoter methylation status
CGB Yogananda, BR Shah, SS Nalawade, GK Murugesan, FF Yu, …
American Journal of Neuroradiology 42 (5), 845-852
Special Series Guest Editorial: Artificial Intelligence and Machine Learning in Biomedical Optics
B Shabestri, MA Anastasio, B Fei, F Leblond
Journal of biomedical optics 26 (5)
Liposome-imipramine blue inhibits sonic hedgehog medulloblastoma in vivo
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Development of a real-time spectral imaging system using in-site micro-LED-based illumination and high-speed micro-camera for endoscopic applications
N Modir, M Shahedi, J Dormer, B Fei
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GPU-based simulation of echocardiography volumes using quantitative fiber-angle-to-backscatter measurements
M Yociss, B Fei
Medical Imaging 2021: Ultrasonic Imaging and Tomography 11602, 185-195
Automatic segmentation of the prostate on MR images based on anatomy and deep learning
L Tao, L Ma, M Xie, X Liu, Z Tian, B Fei
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Assessing reproducibility in magnetic resonance (MR) radiomics features between deep-learning segmented and expert manual segmented data and evaluating their diagnostic …
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Medical Imaging 2021: Computer-Aided Diagnosis 11597, 627-634
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K Caughlin, M Shahedi, JE Shoag, C Barbieri, D Margolis, B Fei
Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and …
Computer-aided classification of lung nodules on CT images with expert knowledge
C Wan, L Ma, X Liu, B Fei
Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and …
Virtual reality assisted cardiac catheterization
P Bettati, JD Dormer, J Young, M Shahedi, B Fei
Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and …
Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and machine learning
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Medical Imaging 2021: Digital Pathology 11603, 165-173
Pixel-level tumor margin assessment of surgical specimen with hyperspectral imaging and deep learning classification
L Ma, M Shahedi, T Shi, M Halicek, JV Little, AY Chen, LL Myers, …
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Multiparametric radiomics for predicting the aggressiveness of papillary thyroid carcinoma using hyperspectral images
M Halicek, JV Little, AY Chen, B Fei
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L Ma, X Zhou, JV Little, AY Chen, LL Myers, BD Sumer, B Fei
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Cross-Vendor CT Image Data Harmonization Using CVH-CT
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AMIA Annual Symposium Proceedings 2021, 1099
Comprehensive review of surgical microscopes: technology development and medical applications
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Journal of biomedical optics 26 (1), 010901
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A novel fully automated MRI-based deep-learning method for classification of 1p/19q co-deletion status in brain gliomas
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UT Dallas Researchers Design Tools to Fight Breast Cancer
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Information Extraction Techniques in Hyperspectral Imaging Biomedical Applications
S Ortega, M Halicek, H Fabelo, E Quevedo, B Fei, GM Callico
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Multidimensional and Multiresolution Ensemble Networks for Brain Tumor Segmentation
GK Murugesan, S Nalawade, C Ganesh, B Wagner, FF Yu, B Fei, …
International MICCAI Brainlesion Workshop, 448-457
Graph‐convolutional‐network‐based interactive prostate segmentation in MR images
Z Tian, X Li, Y Zheng, Z Chen, Z Shi, L Liu, B Fei
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Sequential vessel segmentation via deep channel attention network
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Hyperspectral superpixel-wise glioblastoma tumor detection in histological samples
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Applied Sciences 10 (13), 4448
A Fully Automated Deep Learning Network for Brain Tumor Segmentation.
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A fully automated deep learning network for brain tumor segmentation
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Hyperspectral and multispectral imaging in digital and computational pathology: a systematic review
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Biomedical Optics Express 11 (6), 3195-3233
MRI-based deep learning method for determining methylation status of the o6-methylguanine–dna methyltransferase promoter outperforms tissue based methods in brain gliomas
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A multi-level similarity measure for the retrieval of the common CT imaging signs of lung diseases
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Hyperspectral imaging for the detection of glioblastoma tumor cells in H&E slides using convolutional neural networks
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Sensors 20 (7), 1911
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Renal biopsy under augmented reality guidance
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Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and …
Image guided mitral valve replacement: registration of 3D ultrasound and 2D x-ray images
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Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions, and …
Conditional generative adversarial network for synthesizing hyperspectral images of breast cancer cells from digitized histology
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Medical Imaging 2020: Digital Pathology 11320, 198-205
Augmented reality-assisted biopsy of soft tissue lesions
P Bettati, M Chalian, J Huang, JD Dormer, M Shahedi, B Fei
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Hyperspectral imaging and deep learning for the detection of breast cancer cells in digitized histological images
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Medical Imaging 2020: Digital Pathology 11320, 206-214
Siamese neural networks for the classification of high-dimensional radiomic features
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Medical Imaging 2020: Computer-Aided Diagnosis 11314, 883-891
A complex dual-modality kidney phantom for renal biopsy studies
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Medical Imaging 2020: Ultrasonic Imaging and Tomography 11319, 105-110
Segmentation of uterus and placenta in MR images using a fully convolutional neural network
M Shahedi, JD Dormer, AD TT, QN Do, Y Xi, MA Lewis, …
Medical Imaging 2020: Computer-Aided Diagnosis 11314, 411-418
Using a 22-layer U-Net to perform segmentation of squamous cell carcinoma on digitized head and neck histological images
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Medical Imaging 2020: Digital Pathology 11320, 76-83
Incorporating minimal user input into deep-learning-based image segmentation
M Shahedi, M Halicek, JD Dormer, B Fei
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A novel fully automated MRI-based deep-learning method for classification of IDH mutation status in brain gliomas
CG Bangalore Yogananda, BR Shah, M Vejdani-Jahromi, SS Nalawade, …
Neuro-oncology 22 (3), 402-411
Tumor detection of the thyroid and salivary glands using hyperspectral imaging and deep learning
M Halicek, JD Dormer, JV Little, AY Chen, B Fei
Biomedical Optics Express 11 (3), 1383-1400
Abdominal muscle segmentation from CT using a convolutional neural network
A Chhabra, J Dormer, P Jones, RD Boutin, L Lenchik, B Fei
Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and …
In vivo cancer detection in animal model using hyperspectral image classification with wavelet feature extraction
L Ma, M Halicek, B Fei
Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and …
Fully automated segmentation of the right ventricle in patients with repaired Tetralogy of Fallot using U-Net
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Medical Imaging 2020: Biomedical Applications in Molecular, Structural, and …
Development of a polarized hyperspectral microscope for cardiac fiber orientation imaging
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Development of a new polarized hyperspectral imaging microscope
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Imaging, Therapeutics, and Advanced Technology in Head and Neck Surgery and …
Hyperspectral microscopic imaging for automatic detection of head and neck squamous cell carcinoma using histologic image and machine learning
L Ma, M Halicek, X Zhou, J Dormer, B Fei
Proceedings of SPIE–the International Society for Optical Engineering 11320
Information Extraction Techniques in Hyperspectral Imaging Biomedical Applications
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Hyperspectral imaging and deep learning for the detection of breast cancer cells in digitized histological images
S Ortega Sarmiento, M Halicek, HA Fabelo Gómez, …
Progress in Biomedical Optics and Imaging-Proceedings of SPIE
Brain Tumor IDH, 1p/19q, and MGMT Molecular Classification Using MRI-based Deep Learning: Effect of Motion and Motion Correction
SS Nalawade, FY Fang, CGB Yogananda, GK Murugesan, BR Shah, …
bioRxiv
MRI-BASED DEEP LEARNING METHOD FOR DETERMINING METHYLATION STATUS OF THE O6-METHYLGUANINE–DNA METHYLTRANSFERASE PROMOTER OUTPERFORMS TISSUE BASED METHODS IN BRAIN GLIOMAS
CGB Yogananda, BR Shah, SS Nalawade, GK Murugesan, FY Frank, …
bioRxiv
STAN-CT: Standardizing CT Image using Generative Adversarial Networks
M Selim, J Zhang, B Fei, GQ Zhang, J Chen
AMIA Annual Symposium Proceedings 2020, 1100
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DM Twickler, QN Do, Y Xi, M Shahedi, J Dormer, AD TT, MA Lewis, …
American Journal of Obstetrics & Gynecology 222 (1), S158-S159
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In-Vivo and Ex-Vivo Tissue Analysis through Hyperspectral Imaging Techniques: Revealing the Invisible Features of Cancer
M Halicek, H Fabelo, S Ortega, GM Callico, B Fei
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Task-specific multispectral band selection
SJ Wirkert, F Isensee, AS Vemuri, LA Ayala, KH Maier-Hein,
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arXiv preprint arXiv:1905.11297
Deep learning-based three-dimensional segmentation of the prostate on computed tomography images
M Shahedi, M Halicek, JD Dormer, DM Schuster, B Fei
Journal of Medical Imaging 6 (2), 025003
18F-Fluciclovine parameters on targeted prostate biopsy associated with true positivity in recurrent prostate cancer.
OA Abiodun-Ojo, AA Akintayo, OO Akin-Akintayo, FI Tade, PT Nieh, …
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Detection of squamous cell carcinoma in digitized histological images from the head and neck using convolutional neural networks
M Halicek, M Shahedi, JV Little, AY Chen, LL Myers, BD Sumer, B Fei
Medical Imaging 2019: Digital Pathology 10956, 109560K
Deep 3D convolutional neural networks for fast super-resolution ultrasound imaging
K Brown, J Dormer, B Fei, K Hoyt
Medical Imaging 2019: Ultrasonic Imaging and Tomography 10955, 1095502
Radiomics analysis of MRI for predicting molecular subtypes of breast cancer in young women
Q Li, J Dormer, P Daryani, D Chen, Z Zhang, B Fei
Medical Imaging 2019: Computer-Aided Diagnosis 10950, 1095044
Cancer detection using hyperspectral imaging and evaluation of the superficial tumor margin variance with depth
M Halicek, H Fabelo, S Ortega, JV Little, X Wang, AY Chen, GM Callico, …
Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and …
Surgical aid visualization system for glioblastoma tumor identification based on deep learning and in-vivo hyperspectral images of human patients
H Fabelo, M Halicek, S Ortega, A Szolna, J Morera, R Sarmiento, …
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A semiautomatic approach for prostate segmentation in MR images using local texture classification and statistical shape modeling
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Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and …
Optical biopsy of head and neck cancer using hyperspectral imaging and convolutional neural networks
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Accurate vessel extraction via tensor completion of background layer in X-ray coronary angiograms
B Qin, M Jin, D Hao, Y Lv, Q Liu, Y Zhu, S Ding, J Zhao, B Fei
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Feasibility and Initial Results: Fluciclovine PET/Ultrasound Fusion Targeted Biopsy of Recurrent Prostate Cancer
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Deep Learning-Based Framework for In Vivo Identification of Glioblastoma Tumor using Hyperspectral Images of Human Brain
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Phase asymmetry guided adaptive fractional-order total variation and diffusion for feature-preserving ultrasound despeckling
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Cardiac Fiber Imaging with 3D Ultrasound and MR Diffusion Tensor Imaging
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Cardiovascular Imaging and Image Analysis, 307
Selective modification of fluciclovine (18F) transport in prostate carcinoma xenografts
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A semiautomatic segmentation method for prostate in CT images using local texture classification and statistical shape modeling
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The role of fluciclovine (18F) PET/CT directed, 3D ultrasound-guided fusion targeted biopsy in the detection of biochemically recurrent prostate cancer
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European journal of radiology 102, 1-8
Domain and task specific multispectral band selection (conference presentation)
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Design and Quality for Biomedical Technologies XI 10486, 104860H
A semiautomatic algorithm for three-dimensional segmentation of the prostate on CT images using shape and local texture characteristics
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Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and …
Heart chamber segmentation from CT using convolutional neural networks
JD Dormer, L Ma, M Halicek, CM Reilly, E Schreibmann, B Fei
Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and …
Deformable registration of histological cancer margins to gross hyperspectral images using demons
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Medical Imaging 2018: Digital Pathology 10581, 105810N
Ultrasound segmentation of rat hearts using convolution neural networks
JD Dormer, R Guo, M Shen, R Jiang, MB Wagner, B Fei
Medical Imaging 2018: Ultrasonic Imaging and Tomography 10580, 105801A
Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling
B Fei, RJ Webster
Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series …
Imaging technologies for cardiac fiber and heart failure: a review
SR Watson, JD Dormer, B Fei
Heart failure reviews 23 (2), 273-289
Detection and delineation of squamous neoplasia with hyperspectral imaging in a mouse model of tongue carcinogenesis
G Lu, D Wang, X Qin, S Muller, X Wang, AY Chen, ZG Chen, B Fei
Journal of biophotonics 11 (3), e201700078
Convolutional neural networks for the detection of diseased hearts using CT images and left atrium patches
JD Dormer, M Halicek, L Ma, CM Reilly, E Schreibmann, B Fei
Medical Imaging 2018: Computer-Aided Diagnosis 10575, 1057530
Optical biopsy of head and neck cancer using hyperspectral imaging and convolutional neural networks
M Halicek, JV Little, X Wang, M Patel, CC Griffith, MW El-Deiry, AY Chen, …
Optical Imaging, Therapeutics, and Advanced Technology in Head and Neck …
Tumor margin classification of head and neck cancer using hyperspectral imaging and convolutional neural networks
M Halicek, JV Little, X Wang, M Patel, CC Griffith, AY Chen, B Fei
Proceedings of SPIE–the International Society for Optical Engineering 10576
Progression of Medial Arterial Calcification In Chronic Kidney Disease
S Manzoor, S Ahmed, A Ali, KH Han, I Sechopoulis, A O’Neill,
B Fei, …
Kidney International Reports
PSNet: prostate segmentation on MRI based on a convolutional neural network
Z Tian, L Liu, Z Zhang, B Fei
Journal of Medical Imaging 5 (2), 021208
Random-valued impulse noise removal using adaptive ranked-ordered impulse detector
Q Xu, Y Li, Y Guo, S Wu, M Sbert
Journal of Electronic Imaging 27 (1), 013001
Ultrasound imaging technologies for breast cancer detection and management: a review
R Guo, G Lu, B Qin, B Fei
Ultrasound in medicine & biology 44 (1), 37-70